Variant report

Variant	rs59715484
Chromosome Location	chr6:36582927-36582928
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36582725..36583617-chr6:36726492..36727186,4	K562	blood:
2	chr6:36581615..36586295-chr6:36690989..36695468,6	MCF-7	breast:
3	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
4	chr6:36454716..36456813-chr6:36580873..36583676,2	K562	blood:
5	chr6:36582648..36583548-chr6:36726442..36727575,5	MCF-7	breast:
6	chr6:36581617..36586332-chr6:36722874..36726727,8	MCF-7	breast:
7	chr6:36582002..36584849-chr6:36741162..36742749,2	MCF-7	breast:
8	chr6:36582828..36583431-chr6:36692525..36693052,2	MCF-7	breast:
9	chr6:36582741..36583569-chr6:36692167..36692864,2	MCF-7	breast:
10	chr6:36580937..36583025-chr6:36583380..36584912,2	MCF-7	breast:
11	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
12	chr6:36581763..36584734-chr6:36584798..36588303,5	K562	blood:
13	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11552549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17553386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3087654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56799886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56814071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56845418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56900755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56900950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58073599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59274016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59569857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61631302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408360	0.95[AFR][1000 genomes]
rs73408367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73410214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410228	0.91[AFR][1000 genomes]
rs73410230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410240	0.92[EUR][1000 genomes]
rs73410246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
3	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:36571600-36585000	Strong transcription	Thymus	Thymus
5	chr6:36572000-36583200	Strong transcription	Fetal Stomach	stomach
6	chr6:36575600-36583200	Weak transcription	Hela-S3	cervix
7	chr6:36576200-36586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
9	chr6:36576600-36583200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:36576600-36584600	Weak transcription	Colonic Mucosa	Colon
11	chr6:36576600-36586800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:36577400-36595200	Weak transcription	Psoas Muscle	Psoas
13	chr6:36577600-36583200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:36577600-36584600	Weak transcription	Pancreas	Pancrea
15	chr6:36577600-36584800	Weak transcription	Right Ventricle	heart
16	chr6:36577800-36586400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:36577800-36587800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:36577800-36591000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:36577800-36595200	Weak transcription	Small Intestine	intestine
20	chr6:36578000-36583200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:36578000-36584600	Weak transcription	HSMMtube	muscle
22	chr6:36579000-36584200	Weak transcription	HMEC	breast
23	chr6:36579000-36584400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:36579400-36584200	Weak transcription	NHEK	skin
25	chr6:36580000-36584400	Weak transcription	NHDF-Ad	bronchial
26	chr6:36580000-36586400	Weak transcription	K562	blood
27	chr6:36580200-36584400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:36580200-36584800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:36580200-36586600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:36580200-36590800	Weak transcription	NHLF	lung
31	chr6:36580200-36591000	Weak transcription	Ovary	ovary
32	chr6:36580200-36591000	Weak transcription	NH-A	brain
33	chr6:36580200-36599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:36580400-36584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:36580400-36584400	Weak transcription	HSMM	muscle
36	chr6:36580400-36584600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:36580400-36584600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:36580400-36584600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:36580400-36584600	Weak transcription	Gastric	stomach
40	chr6:36580400-36586200	Weak transcription	Spleen	Spleen
41	chr6:36580400-36586400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:36580400-36587000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:36580400-36590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:36580400-36591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:36580400-36593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:36580600-36584600	Weak transcription	Esophagus	oesophagus
47	chr6:36580800-36584600	Weak transcription	Brain Angular Gyrus	brain
48	chr6:36581000-36584600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:36581000-36584800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:36581000-36584800	Weak transcription	Osteobl	bone

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