Variant report

Variant	rs73408400
Chromosome Location	chr6:36582638-36582639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36581615..36586295-chr6:36690989..36695468,6	MCF-7	breast:
2	chr6:36579421..36589066-chr6:36722460..36728572,25	MCF-7	breast:
3	chr6:36454716..36456813-chr6:36580873..36583676,2	K562	blood:
4	chr6:36581617..36586332-chr6:36722874..36726727,8	MCF-7	breast:
5	chr6:36582002..36584849-chr6:36741162..36742749,2	MCF-7	breast:
6	chr6:36580937..36583025-chr6:36583380..36584912,2	MCF-7	breast:
7	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
8	chr6:36581763..36584734-chr6:36584798..36588303,5	K562	blood:
9	chr6:36580200..36582709-chr6:36638711..36641667,2	K562	blood:
10	chr6:36581748..36603537-chr6:36641861..36652365,77	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213500	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000251864	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11552549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17553386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56799886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56814071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56845418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56900950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58073599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59274016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59569857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59715484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61631302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62402215	0.86[ASN][1000 genomes]
rs73408319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408360	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73408367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410228	0.91[AFR][1000 genomes]
rs73410230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410240	0.92[EUR][1000 genomes]
rs73410246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73410247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
4	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:36571600-36585000	Strong transcription	Thymus	Thymus
6	chr6:36572000-36583200	Strong transcription	Fetal Stomach	stomach
7	chr6:36573600-36582800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:36575600-36583200	Weak transcription	Hela-S3	cervix
9	chr6:36576200-36586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:36576200-36590800	Weak transcription	Right Atrium	heart
11	chr6:36576600-36583200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:36576600-36584600	Weak transcription	Colonic Mucosa	Colon
13	chr6:36576600-36586800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:36577400-36595200	Weak transcription	Psoas Muscle	Psoas
15	chr6:36577600-36582800	Weak transcription	Stomach Mucosa	stomach
16	chr6:36577600-36583200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:36577600-36584600	Weak transcription	Pancreas	Pancrea
18	chr6:36577600-36584800	Weak transcription	Right Ventricle	heart
19	chr6:36577800-36586400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:36577800-36587800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:36577800-36591000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:36577800-36595200	Weak transcription	Small Intestine	intestine
23	chr6:36578000-36583200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:36578000-36584600	Weak transcription	HSMMtube	muscle
25	chr6:36579000-36584200	Weak transcription	HMEC	breast
26	chr6:36579000-36584400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:36579400-36584200	Weak transcription	NHEK	skin
28	chr6:36580000-36584400	Weak transcription	NHDF-Ad	bronchial
29	chr6:36580000-36586400	Weak transcription	K562	blood
30	chr6:36580200-36584400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:36580200-36584800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:36580200-36586600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:36580200-36590800	Weak transcription	NHLF	lung
34	chr6:36580200-36591000	Weak transcription	Ovary	ovary
35	chr6:36580200-36591000	Weak transcription	NH-A	brain
36	chr6:36580200-36599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:36580400-36582800	Weak transcription	HUVEC	blood vessel
38	chr6:36580400-36584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:36580400-36584400	Weak transcription	HSMM	muscle
40	chr6:36580400-36584600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:36580400-36584600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:36580400-36584600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:36580400-36584600	Weak transcription	Gastric	stomach
44	chr6:36580400-36586200	Weak transcription	Spleen	Spleen
45	chr6:36580400-36586400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:36580400-36587000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:36580400-36590800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:36580400-36591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:36580400-36593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:36580600-36584600	Weak transcription	Esophagus	oesophagus

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