Variant report

Variant	rs56956775
Chromosome Location	chr3:150910485-150910486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150909405..150911951-chr3:150919073..150920609,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56285930	1.00[AMR][1000 genomes]
rs59666614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61576895	1.00[AMR][1000 genomes]
rs73869136	1.00[AMR][1000 genomes]
rs73869148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869172	1.00[AMR][1000 genomes]
rs73869175	1.00[AMR][1000 genomes]
rs73869184	1.00[AMR][1000 genomes]
rs73869190	1.00[AMR][1000 genomes]
rs73869191	1.00[AMR][1000 genomes]
rs73869193	1.00[AMR][1000 genomes]
rs73869195	1.00[AMR][1000 genomes]
rs73869200	1.00[AMR][1000 genomes]
rs73872011	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
4	chr3:150889200-150914800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:150889600-150913800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:150890600-150923400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:150896200-150927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:150896600-150918200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:150897200-150916200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:150897600-150913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:150898600-150917200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:150899000-150917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:150900400-150917200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:150900600-150917000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:150900800-150917200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:150901200-150917600	Weak transcription	Fetal Thymus	thymus
17	chr3:150901200-150917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:150901400-150911600	Weak transcription	Brain Substantia Nigra	brain
19	chr3:150901400-150914200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:150901400-150916200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:150901600-150913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:150901800-150918000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:150902200-150916400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:150904200-150911800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:150904600-150914000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:150904600-150914000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:150904600-150915200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:150904800-150911800	Weak transcription	Brain Anterior Caudate	brain
29	chr3:150904800-150916200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:150906000-150912400	Strong transcription	Primary hematopoietic stem cells	blood
31	chr3:150907000-150917400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:150907200-150916200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr3:150907400-150915800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:150907400-150916800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:150907800-150913200	Weak transcription	HepG2	liver
36	chr3:150908400-150911600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:150908800-150913600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:150908800-150933200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:150909000-150917200	Weak transcription	Dnd41	blood
40	chr3:150909000-150918800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:150909200-150911400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr3:150909400-150913400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr3:150909600-150916200	Weak transcription	Fetal Intestine Large	intestine
44	chr3:150910000-150914600	Weak transcription	Primary T cells from cord blood	blood

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