Variant report

Variant	rs61576895
Chromosome Location	chr3:150995796-150995797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56285930	1.00[AMR][1000 genomes]
rs56956775	1.00[AMR][1000 genomes]
rs59666614	1.00[AMR][1000 genomes]
rs73869062	1.00[AMR][1000 genomes]
rs73869065	1.00[AMR][1000 genomes]
rs73869136	1.00[AMR][1000 genomes]
rs73869148	1.00[AMR][1000 genomes]
rs73869172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869191	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869193	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872011	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150977800-151000000	Weak transcription	Placenta	Placenta
2	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:150983800-151000600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:150984000-150996000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:150984200-150998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:150984600-151003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:150984600-151003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:150988600-150995800	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:150991400-150998600	Enhancers	Primary T cells from cord blood	blood
11	chr3:150991800-150998800	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:150992000-150997400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:150992200-150995800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:150992200-150997000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:150992600-150996800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr3:150992600-150997000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:150992800-150996800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:150992800-150997000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:150993000-150996800	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr3:150993200-150995800	Weak transcription	Dnd41	blood
21	chr3:150993600-150996800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:150993600-150996800	Active TSS	Adipose Nuclei	Adipose
23	chr3:150994000-150996200	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr3:150994000-150996400	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr3:150994200-150996200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr3:150994200-150996400	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr3:150994400-150995800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:150994400-150997200	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr3:150994400-150998200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:150994600-150996000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:150994600-150996000	Weak transcription	Brain Anterior Caudate	brain
32	chr3:150994600-150996200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:150994600-150996400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:150994600-150999600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:150994600-151003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:150994800-150995800	Weak transcription	GM12878-XiMat	blood
37	chr3:150994800-150996000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:150995000-150996000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr3:150995000-150996000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr3:150995000-150996000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:150995000-150996000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr3:150995200-150996000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr3:150995200-150996400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:150995400-150996200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:150995600-150996800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:150995600-150997400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr3:150995600-150998400	Enhancers	Fetal Thymus	thymus

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