Variant report

Variant	rs73869195
Chromosome Location	chr3:151033164-151033165
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:151033045-151033259	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:151033062-151033319	MCF10A-Er-Src	breast:	n/a	n/a
3	FOSL1	chr3:151032841-151033424	HCT-116	colon:	n/a	n/a
4	FOS	chr3:151032982-151033311	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr3:151031759-151034946	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr3:151032969-151033318	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr3:151033068-151033260	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr3:151032982-151033312	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151029509..151032122-chr3:151032305..151033931,2	K562	blood:

Variant related genes	Relation type
MED12L	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13325434	1.00[AMR][1000 genomes]
rs56285930	1.00[AMR][1000 genomes]
rs56956775	1.00[AMR][1000 genomes]
rs59666614	1.00[AMR][1000 genomes]
rs61576895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869062	1.00[AMR][1000 genomes]
rs73869065	1.00[AMR][1000 genomes]
rs73869136	1.00[AMR][1000 genomes]
rs73869148	1.00[AMR][1000 genomes]
rs73869172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:151023200-151034600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:151027600-151034400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:151030400-151038400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:151031200-151034200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:151031200-151038200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:151032000-151033400	Transcr. at gene 5' and 3'	NHEK	skin
8	chr3:151032000-151034000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:151032200-151033400	Active TSS	Esophagus	oesophagus
10	chr3:151032200-151033600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:151032200-151035200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:151032200-151039200	Enhancers	Hela-S3	cervix
13	chr3:151032400-151033200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:151032400-151033400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:151032400-151033400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:151032600-151033200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:151032600-151033400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:151032600-151033400	Enhancers	NHDF-Ad	bronchial
19	chr3:151032600-151034600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:151032600-151034600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:151032600-151034800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:151032600-151034800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:151032800-151034400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:151032800-151034600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:151032800-151034800	Active TSS	HMEC	breast
26	chr3:151032800-151036000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:151032800-151036800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr3:151033000-151033200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:151033000-151034200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:151033000-151035400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:151033000-151036600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:151033000-151038000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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