Variant report

Variant	rs73869184
Chromosome Location	chr3:151009505-151009506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56285930	1.00[AMR][1000 genomes]
rs56956775	1.00[AMR][1000 genomes]
rs59666614	1.00[AMR][1000 genomes]
rs61576895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869062	1.00[AMR][1000 genomes]
rs73869065	1.00[AMR][1000 genomes]
rs73869136	1.00[AMR][1000 genomes]
rs73869148	1.00[AMR][1000 genomes]
rs73869172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869191	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869193	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872011	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:150999400-151011200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:151002000-151010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:151002000-151012000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:151002200-151009600	Weak transcription	HMEC	breast
7	chr3:151002200-151010800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:151002400-151018000	Weak transcription	NHLF	lung
9	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:151002800-151010800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:151002800-151011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:151004400-151009600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:151005200-151014000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:151008800-151010400	Weak transcription	NHEK	skin
15	chr3:151008800-151011200	Weak transcription	Esophagus	oesophagus
16	chr3:151009000-151011200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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