Variant report

Variant	rs73869200
Chromosome Location	chr3:151048742-151048743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13325434	1.00[AMR][1000 genomes]
rs56285930	1.00[AMR][1000 genomes]
rs56956775	1.00[AMR][1000 genomes]
rs59666614	1.00[AMR][1000 genomes]
rs61576895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869062	1.00[AMR][1000 genomes]
rs73869065	1.00[AMR][1000 genomes]
rs73869148	1.00[AMR][1000 genomes]
rs73869172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151045600-151056600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:151045600-151063600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:151046800-151049000	Weak transcription	Right Atrium	heart
4	chr3:151047000-151055200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:151047400-151050200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr3:151047600-151049800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:151047800-151049000	Active TSS	Primary hematopoietic stem cells	blood
8	chr3:151047800-151050000	Enhancers	Adipose Nuclei	Adipose
9	chr3:151048000-151049200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr3:151048200-151049000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:151048200-151050000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:151048400-151048800	Active TSS	Primary monocytes fromperipheralblood	blood
13	chr3:151048400-151049000	Active TSS	Primary B cells from cord blood	blood
14	chr3:151048400-151051200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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