Variant report

Variant	rs73869190
Chromosome Location	chr3:151020591-151020592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150999410..151001887-chr3:151020524..151022989,3	K562	blood:
2	chr3:151005161..151007217-chr3:151020047..151021890,2	MCF-7	breast:
3	chr3:151011307..151016157-chr3:151019117..151025599,7	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13325434	1.00[AMR][1000 genomes]
rs56285930	1.00[AMR][1000 genomes]
rs56956775	1.00[AMR][1000 genomes]
rs59666614	1.00[AMR][1000 genomes]
rs61576895	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869062	1.00[AMR][1000 genomes]
rs73869065	1.00[AMR][1000 genomes]
rs73869136	1.00[AMR][1000 genomes]
rs73869148	1.00[AMR][1000 genomes]
rs73869172	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869175	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73872011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:151010200-151022200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:151011400-151021800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:151011800-151021600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:151012400-151021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:151012800-151021600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:151014400-151021800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:151014400-151022400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:151014400-151022600	Weak transcription	Esophagus	oesophagus
11	chr3:151015200-151021800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:151017000-151021600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:151017000-151022600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:151018200-151021600	Genic enhancers	HMEC	breast
15	chr3:151018200-151022000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:151019000-151020800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:151019000-151022400	Genic enhancers	NHEK	skin
18	chr3:151019200-151021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:151019400-151020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:151019400-151020600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:151019400-151020600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:151019400-151020800	Enhancers	Hela-S3	cervix
23	chr3:151020000-151022400	Weak transcription	NHLF	lung
24	chr3:151020200-151021800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:151020200-151021800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:151020200-151022000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:151020200-151022600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:151020200-151022600	Weak transcription	NHDF-Ad	bronchial

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