Variant report

Variant	rs57009479
Chromosome Location	chr15:76370644-76370645
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs2959834	1.00[AMR][1000 genomes]
rs57562463	1.00[AMR][1000 genomes]
rs57626278	1.00[AMR][1000 genomes]
rs59716814	1.00[AMR][1000 genomes]
rs59801043	1.00[AMR][1000 genomes]
rs60307360	1.00[AMR][1000 genomes]
rs60816540	1.00[AMR][1000 genomes]
rs61354893	1.00[AMR][1000 genomes]
rs7165546	1.00[AMR][1000 genomes]
rs7169517	1.00[AMR][1000 genomes]
rs7176992	1.00[AMR][1000 genomes]
rs73446407	1.00[AMR][1000 genomes]
rs73446431	1.00[AMR][1000 genomes]
rs73447002	1.00[AMR][1000 genomes]
rs73449022	1.00[AMR][1000 genomes]
rs73449038	1.00[AMR][1000 genomes]
rs73449058	1.00[AMR][1000 genomes]
rs73449064	1.00[AMR][1000 genomes]
rs73449065	1.00[AMR][1000 genomes]
rs73449068	1.00[AMR][1000 genomes]
rs73449072	1.00[AMR][1000 genomes]
rs73449087	1.00[AMR][1000 genomes]
rs73449096	1.00[AMR][1000 genomes]
rs73449225	1.00[AMR][1000 genomes]
rs73449257	1.00[AMR][1000 genomes]
rs73451182	1.00[AMR][1000 genomes]
rs8024571	1.00[AMR][1000 genomes]
rs8032436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76367000-76371800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr15:76367200-76376600	Weak transcription	Right Atrium	heart
3	chr15:76368600-76380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:76368800-76371000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:76370000-76371200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr15:76370200-76371400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:76370400-76371400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:76370400-76371400	Enhancers	Psoas Muscle	Psoas
9	chr15:76370400-76371600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:76370400-76371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:76370600-76371400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:76370600-76371800	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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