Variant report

Variant	rs73449096
Chromosome Location	chr15:76332406-76332407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2959834	1.00[AMR][1000 genomes]
rs57009479	1.00[AMR][1000 genomes]
rs57562463	1.00[AMR][1000 genomes]
rs57626278	1.00[AMR][1000 genomes]
rs59716814	1.00[AMR][1000 genomes]
rs59801043	1.00[AMR][1000 genomes]
rs60203528	1.00[AMR][1000 genomes]
rs60307360	1.00[AMR][1000 genomes]
rs60816540	1.00[AMR][1000 genomes]
rs61354893	1.00[AMR][1000 genomes]
rs7165546	1.00[AMR][1000 genomes]
rs7169517	1.00[AMR][1000 genomes]
rs7176992	1.00[AMR][1000 genomes]
rs73446407	1.00[AMR][1000 genomes]
rs73446431	1.00[AMR][1000 genomes]
rs73447002	1.00[AMR][1000 genomes]
rs73449022	1.00[AMR][1000 genomes]
rs73449038	1.00[AMR][1000 genomes]
rs73449058	1.00[AMR][1000 genomes]
rs73449064	1.00[AMR][1000 genomes]
rs73449065	1.00[AMR][1000 genomes]
rs73449068	1.00[AMR][1000 genomes]
rs73449072	1.00[AMR][1000 genomes]
rs73449087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449225	1.00[AMR][1000 genomes]
rs73449257	1.00[AMR][1000 genomes]
rs73451182	1.00[AMR][1000 genomes]
rs8024571	1.00[AMR][1000 genomes]
rs8032436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1617	chr15:76332103-76359435	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76331200-76332600	Weak transcription	Pancreas	Pancrea
2	chr15:76331600-76335600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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