Variant report

Variant	rs73449058
Chromosome Location	chr15:76255410-76255411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76253906..76256331-chr15:76257287..76259030,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2959834	1.00[AMR][1000 genomes]
rs57009479	1.00[AMR][1000 genomes]
rs57562463	1.00[AMR][1000 genomes]
rs57626278	1.00[AMR][1000 genomes]
rs59716814	1.00[AMR][1000 genomes]
rs59801043	1.00[AMR][1000 genomes]
rs60203528	1.00[AMR][1000 genomes]
rs60307360	1.00[AMR][1000 genomes]
rs60816540	1.00[AMR][1000 genomes]
rs61354893	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7165546	1.00[AMR][1000 genomes]
rs7169517	1.00[AMR][1000 genomes]
rs7176992	1.00[AMR][1000 genomes]
rs73446407	1.00[AMR][1000 genomes]
rs73446431	1.00[AMR][1000 genomes]
rs73447002	1.00[AMR][1000 genomes]
rs73449022	1.00[AMR][1000 genomes]
rs73449038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449065	1.00[AMR][1000 genomes]
rs73449068	1.00[AMR][1000 genomes]
rs73449072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449087	1.00[AMR][1000 genomes]
rs73449096	1.00[AMR][1000 genomes]
rs73449225	1.00[AMR][1000 genomes]
rs73449257	1.00[AMR][1000 genomes]
rs73451182	1.00[AMR][1000 genomes]
rs8024571	1.00[AMR][1000 genomes]
rs8032436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1042140	chr15:76243040-76298555	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv542437	chr15:76243040-76298555	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76247800-76258000	Weak transcription	Hela-S3	cervix
2	chr15:76249800-76262800	Weak transcription	Gastric	stomach
3	chr15:76250800-76260200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:76253200-76257000	Weak transcription	Pancreas	Pancrea
5	chr15:76255200-76255600	Active TSS	Stomach Mucosa	stomach

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