Variant report
| Variant | rs73446431 |
|---|---|
| Chromosome Location | chr15:76420018-76420019 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs2959834 | 1.00[AMR][1000 genomes] |
| rs57009479 | 1.00[AMR][1000 genomes] |
| rs57562463 | 1.00[AMR][1000 genomes] |
| rs59716814 | 1.00[AMR][1000 genomes] |
| rs59801043 | 1.00[AMR][1000 genomes] |
| rs60307360 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60816540 | 1.00[AMR][1000 genomes] |
| rs61354893 | 1.00[AMR][1000 genomes] |
| rs7165546 | 1.00[AMR][1000 genomes] |
| rs7169517 | 1.00[AMR][1000 genomes] |
| rs7176992 | 1.00[AMR][1000 genomes] |
| rs73446407 | 1.00[AMR][1000 genomes] |
| rs73447002 | 1.00[AMR][1000 genomes] |
| rs73449022 | 1.00[AMR][1000 genomes] |
| rs73449038 | 1.00[AMR][1000 genomes] |
| rs73449058 | 1.00[AMR][1000 genomes] |
| rs73449064 | 1.00[AMR][1000 genomes] |
| rs73449065 | 1.00[AMR][1000 genomes] |
| rs73449068 | 1.00[AMR][1000 genomes] |
| rs73449072 | 1.00[AMR][1000 genomes] |
| rs73449087 | 1.00[AMR][1000 genomes] |
| rs73449096 | 1.00[AMR][1000 genomes] |
| rs73451182 | 1.00[AMR][1000 genomes] |
| rs8024571 | 1.00[AMR][1000 genomes] |
| rs8032436 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv569998 | chr15:76232605-76550938 | Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1048760 | chr15:76334544-76496977 | Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv833057 | chr15:76367848-76585868 | ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:76416600-76431600 | Weak transcription | Pancreas | Pancrea |
| 2 | chr15:76420000-76421400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
