Variant report

Variant	rs73449022
Chromosome Location	chr15:76226514-76226515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76225604..76228102-chr15:76229975..76232639,2	MCF-7	breast:
2	chr15:76194745..76198135-chr15:76223912..76227637,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2959834	1.00[AMR][1000 genomes]
rs57009479	1.00[AMR][1000 genomes]
rs57562463	1.00[AMR][1000 genomes]
rs57626278	1.00[AMR][1000 genomes]
rs59716814	1.00[AMR][1000 genomes]
rs59801043	1.00[AMR][1000 genomes]
rs60203528	1.00[AMR][1000 genomes]
rs60307360	1.00[AMR][1000 genomes]
rs60816540	1.00[AMR][1000 genomes]
rs61354893	1.00[AMR][1000 genomes]
rs7165546	1.00[AMR][1000 genomes]
rs7169517	1.00[AMR][1000 genomes]
rs7176992	1.00[AMR][1000 genomes]
rs73446407	1.00[AMR][1000 genomes]
rs73446431	1.00[AMR][1000 genomes]
rs73447002	1.00[AMR][1000 genomes]
rs73449038	1.00[AMR][1000 genomes]
rs73449058	1.00[AMR][1000 genomes]
rs73449064	1.00[AMR][1000 genomes]
rs73449065	1.00[AMR][1000 genomes]
rs73449068	1.00[AMR][1000 genomes]
rs73449072	1.00[AMR][1000 genomes]
rs73449087	1.00[AMR][1000 genomes]
rs73449096	1.00[AMR][1000 genomes]
rs73449225	1.00[AMR][1000 genomes]
rs73449257	1.00[AMR][1000 genomes]
rs73451182	1.00[AMR][1000 genomes]
rs8024571	1.00[AMR][1000 genomes]
rs8032436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv904398	chr15:76220285-76359055	Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:76207000-76226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:76207000-76228200	Weak transcription	Brain Substantia Nigra	brain
6	chr15:76207000-76228200	Weak transcription	Colonic Mucosa	Colon
7	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:76207200-76226600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:76211400-76240200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:76215000-76226600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:76215200-76229200	Weak transcription	Esophagus	oesophagus
13	chr15:76215400-76227000	Weak transcription	Small Intestine	intestine
14	chr15:76217000-76228400	Weak transcription	Gastric	stomach
15	chr15:76217200-76252000	Weak transcription	Pancreas	Pancrea
16	chr15:76217400-76228200	Weak transcription	Right Ventricle	heart
17	chr15:76217600-76228200	Strong transcription	NHEK	skin
18	chr15:76217600-76231800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:76217600-76232600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:76218600-76228600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:76219000-76232200	Weak transcription	Psoas Muscle	Psoas
22	chr15:76219600-76231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:76220600-76227800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:76220800-76227000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:76221000-76227800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:76221000-76230800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr15:76221200-76232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:76221400-76226800	Strong transcription	GM12878-XiMat	blood
29	chr15:76221400-76228400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:76221600-76228800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:76221800-76228200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:76222000-76231800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:76222000-76232200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:76222200-76226600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:76222200-76226800	Strong transcription	Adipose Nuclei	Adipose
36	chr15:76222200-76226800	Strong transcription	Dnd41	blood
37	chr15:76222200-76227000	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr15:76222200-76227200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:76222200-76227800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:76222200-76227800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:76222200-76227800	Strong transcription	Fetal Muscle Trunk	muscle
42	chr15:76222200-76227800	Strong transcription	Hela-S3	cervix
43	chr15:76222200-76228000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:76222200-76228000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:76222200-76228000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr15:76222200-76228200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:76222200-76228200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:76222200-76228200	Strong transcription	Liver	Liver
49	chr15:76222200-76228200	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:76222200-76228800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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