Variant report

Variant	rs7169517
Chromosome Location	chr15:76408082-76408083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2959834	1.00[AMR][1000 genomes]
rs57009479	1.00[AMR][1000 genomes]
rs57562463	1.00[AMR][1000 genomes]
rs59716814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59801043	1.00[AMR][1000 genomes]
rs60307360	1.00[AMR][1000 genomes]
rs60816540	1.00[AMR][1000 genomes]
rs61354893	1.00[AMR][1000 genomes]
rs7165546	1.00[AMR][1000 genomes]
rs7176992	1.00[AMR][1000 genomes]
rs73446407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446431	1.00[AMR][1000 genomes]
rs73447002	1.00[AMR][1000 genomes]
rs73449022	1.00[AMR][1000 genomes]
rs73449038	1.00[AMR][1000 genomes]
rs73449058	1.00[AMR][1000 genomes]
rs73449064	1.00[AMR][1000 genomes]
rs73449065	1.00[AMR][1000 genomes]
rs73449068	1.00[AMR][1000 genomes]
rs73449072	1.00[AMR][1000 genomes]
rs73449087	1.00[AMR][1000 genomes]
rs73449096	1.00[AMR][1000 genomes]
rs73449257	1.00[AMR][1000 genomes]
rs73451182	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024571	1.00[AMR][1000 genomes]
rs8032436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76407600-76408600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr15:76407600-76409000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr15:76407600-76412000	Enhancers	Placenta	Placenta
4	chr15:76407800-76408400	Enhancers	Fetal Brain Male	brain
5	chr15:76407800-76408800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:76407800-76409000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr15:76407800-76409000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:76407800-76410400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:76407800-76411400	Enhancers	Pancreas	Pancrea
10	chr15:76408000-76408400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr15:76408000-76408400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:76408000-76408400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:76408000-76408400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr15:76408000-76408800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:76408000-76408800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr15:76408000-76409000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:76408000-76409000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:76408000-76409200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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