Variant report

Variant	rs57058706
Chromosome Location	chr1:165605759-165605760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165599420..165602481-chr1:165605266..165607177,3	MCF-7	breast:
2	chr1:165595783..165597532-chr1:165605260..165606907,2	K562	blood:
3	chr1:165595783..165598843-chr1:165605260..165607101,3	K562	blood:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11799886	0.81[AMR][1000 genomes]
rs11801981	0.80[AMR][1000 genomes]
rs28531901	0.86[EUR][1000 genomes]
rs4626863	0.86[EUR][1000 genomes]
rs61800371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61800391	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61804068	0.83[AMR][1000 genomes]
rs61804069	0.83[AMR][1000 genomes]
rs6664209	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6682771	0.80[AMR][1000 genomes]
rs6693448	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6693483	0.84[EUR][1000 genomes]
rs7516587	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7521640	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7540040	0.86[EUR][1000 genomes]
rs7549530	0.86[EUR][1000 genomes]
rs9333400	0.97[EUR][1000 genomes]
rs9333464	0.81[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165601600-165605800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165601600-165608400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:165601600-165615200	Weak transcription	Spleen	Spleen
4	chr1:165601800-165607400	Enhancers	Brain Substantia Nigra	brain
5	chr1:165601800-165615200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:165602000-165622800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:165602200-165606000	Enhancers	Brain Anterior Caudate	brain
8	chr1:165602200-165624200	Weak transcription	Dnd41	blood
9	chr1:165602400-165606000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:165602400-165606800	Enhancers	Brain Angular Gyrus	brain
11	chr1:165602400-165614400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:165602400-165614800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:165602400-165615000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:165602600-165605800	Enhancers	Right Ventricle	heart
15	chr1:165602600-165606000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:165602600-165606200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:165602600-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:165602600-165606600	Weak transcription	HepG2	liver
19	chr1:165602600-165610400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr1:165602600-165615000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:165603000-165606600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:165603000-165607000	Weak transcription	Aorta	Aorta
23	chr1:165603000-165614800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr1:165603000-165619800	Weak transcription	HSMMtube	muscle
25	chr1:165603200-165607200	Enhancers	Brain Cingulate Gyrus	brain
26	chr1:165603200-165608000	Enhancers	Liver	Liver
27	chr1:165603400-165606600	Weak transcription	HUVEC	blood vessel
28	chr1:165603600-165606000	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:165603600-165606000	Weak transcription	Right Atrium	heart
30	chr1:165603600-165606200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:165603600-165606200	Weak transcription	Hela-S3	cervix
32	chr1:165603600-165606400	Weak transcription	Pancreas	Pancrea
33	chr1:165603600-165606600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr1:165603600-165607000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:165603600-165607000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:165603600-165607400	Weak transcription	Lung	lung
37	chr1:165603600-165608200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:165603600-165608400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:165603600-165608400	Weak transcription	NHEK	skin
40	chr1:165603600-165611400	Weak transcription	Esophagus	oesophagus
41	chr1:165603600-165614600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:165603600-165614800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:165603600-165614800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:165603600-165617400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:165603800-165606200	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:165603800-165624200	Weak transcription	Brain Germinal Matrix	brain
47	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
48	chr1:165604000-165606400	Genic enhancers	Duodenum Mucosa	Duodenum
49	chr1:165604000-165607200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr1:165604000-165608200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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