The 2.0 version of rSNPBase

Variant report

Variant rs61800371
Chromosome Location chr1:165607603-165607604
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165601600-165608400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:165601600-165615200 Weak transcription Spleen Spleen
3 chr1:165601800-165615200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:165602000-165622800 Weak transcription Primary hematopoietic stem cells blood
5 chr1:165602200-165624200 Weak transcription Dnd41 blood
6 chr1:165602400-165614400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:165602400-165614800 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:165602400-165615000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:165602600-165610400 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:165602600-165615000 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr1:165603000-165614800 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr1:165603000-165619800 Weak transcription HSMMtube muscle
13 chr1:165603200-165608000 Enhancers Liver Liver
14 chr1:165603600-165608200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:165603600-165608400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr1:165603600-165608400 Weak transcription NHEK skin
17 chr1:165603600-165611400 Weak transcription Esophagus oesophagus
18 chr1:165603600-165614600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr1:165603600-165614800 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr1:165603600-165614800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:165603600-165617400 Weak transcription Rectal Smooth Muscle rectum
22 chr1:165603800-165624200 Weak transcription Brain Germinal Matrix brain
23 chr1:165603800-165631200 Weak transcription Fetal Kidney kidney
24 chr1:165604000-165608200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
25 chr1:165604000-165614400 Weak transcription K562 blood
26 chr1:165604000-165616000 Weak transcription Gastric stomach
27 chr1:165604200-165610400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:165604400-165610000 Strong transcription Primary T cells fromperipheralblood blood
29 chr1:165604400-165614800 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr1:165604400-165628000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr1:165604600-165620000 Weak transcription Fetal Brain Female brain
32 chr1:165604800-165610200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:165604800-165623000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr1:165604800-165628400 Weak transcription H1 Cell Line embryonic stem cell
35 chr1:165604800-165632200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:165605000-165620200 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr1:165605200-165607800 Enhancers GM12878-XiMat blood
38 chr1:165605200-165620000 Weak transcription Primary T cells from cord blood blood
39 chr1:165605200-165628800 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr1:165605400-165607800 Enhancers Rectal Mucosa Donor 31 rectum
41 chr1:165605400-165608000 Strong transcription Fetal Stomach stomach
42 chr1:165605400-165610200 Enhancers Ovary ovary
43 chr1:165605400-165620200 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr1:165605600-165614000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr1:165605600-165614600 Weak transcription Primary B cells from peripheral blood blood
46 chr1:165605600-165618000 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr1:165605600-165622600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:165606000-165608600 Strong transcription Primary T helper cells fromperipheralblood blood
49 chr1:165606000-165609400 Genic enhancers Breast Myoepithelial Primary Cells Breast
50 chr1:165606200-165607800 Genic enhancers Fetal Intestine Small intestine

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Last update: Aug 31, 2015