Variant report
| Variant | rs7524970 |
|---|---|
| Chromosome Location | chr1:165591292-165591293 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:165589382..165591602-chr1:165595692..165598482,2 | K562 | blood: | |
| 2 | chr1:165589382..165593490-chr1:165595077..165601598,7 | K562 | blood: | |
| 3 | chr1:165585602..165587160-chr1:165590121..165591846,2 | MCF-7 | breast: | |
| 4 | chr1:165590538..165593490-chr1:165599328..165601598,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000143198 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11801981 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1913837 | 0.83[ASN][1000 genomes] |
| rs28531901 | 0.86[EUR][1000 genomes] |
| rs4626863 | 0.86[EUR][1000 genomes] |
| rs57256442 | 0.96[EUR][1000 genomes] |
| rs61557603 | 0.93[EUR][1000 genomes] |
| rs61800371 | 0.82[EUR][1000 genomes] |
| rs61800391 | 0.82[EUR][1000 genomes] |
| rs61804068 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61804069 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6664209 | 0.82[EUR][1000 genomes] |
| rs6682771 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6693448 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6693483 | 0.84[EUR][1000 genomes] |
| rs7516587 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7521640 | 0.81[EUR][1000 genomes] |
| rs7540040 | 0.86[EUR][1000 genomes] |
| rs7549530 | 0.86[EUR][1000 genomes] |
| rs9333400 | 0.81[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
