Variant report

Variant	rs28531901
Chromosome Location	chr1:165593833-165593834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165592734..165595920-chr1:165598230..165601620,5	MCF-7	breast:
2	chr1:165593403..165596867-chr1:165737670..165740006,3	K562	blood:
3	chr1:165593732..165596222-chr1:165672149..165673672,2	K562	blood:

Variant related genes	Relation type
ENSG00000143183	Chromatin interaction
ENSG00000224358	Chromatin interaction
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11808590	0.91[ASN][1000 genomes]
rs11809495	0.91[ASN][1000 genomes]
rs11809976	0.91[ASN][1000 genomes]
rs1415500	0.91[ASN][1000 genomes]
rs1415501	0.91[ASN][1000 genomes]
rs1415502	0.91[ASN][1000 genomes]
rs1832296	0.91[ASN][1000 genomes]
rs1913838	0.91[ASN][1000 genomes]
rs28682307	0.91[ASN][1000 genomes]
rs4504864	0.91[ASN][1000 genomes]
rs4626863	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57058706	0.86[EUR][1000 genomes]
rs57098971	0.91[ASN][1000 genomes]
rs57256442	0.82[EUR][1000 genomes]
rs57831387	0.91[ASN][1000 genomes]
rs57947536	0.91[ASN][1000 genomes]
rs58754537	0.91[ASN][1000 genomes]
rs60755789	0.91[ASN][1000 genomes]
rs61557603	0.84[EUR][1000 genomes]
rs61800371	0.91[EUR][1000 genomes]
rs61800391	0.91[EUR][1000 genomes]
rs61804068	0.86[EUR][1000 genomes]
rs61804069	0.86[EUR][1000 genomes]
rs6426921	0.91[ASN][1000 genomes]
rs6426923	0.91[ASN][1000 genomes]
rs6426924	0.91[ASN][1000 genomes]
rs6664209	0.91[EUR][1000 genomes]
rs6669092	0.91[ASN][1000 genomes]
rs6679779	0.91[ASN][1000 genomes]
rs6689822	0.91[ASN][1000 genomes]
rs6689895	0.91[ASN][1000 genomes]
rs6689903	0.91[ASN][1000 genomes]
rs6689926	0.91[ASN][1000 genomes]
rs6690104	1.00[ASN][1000 genomes]
rs6690679	0.91[ASN][1000 genomes]
rs6693448	0.96[EUR][1000 genomes]
rs6693471	0.91[ASN][1000 genomes]
rs6693483	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701006	0.91[ASN][1000 genomes]
rs6703260	0.91[ASN][1000 genomes]
rs7516587	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7521640	0.90[EUR][1000 genomes]
rs7524970	0.86[EUR][1000 genomes]
rs7537008	0.91[ASN][1000 genomes]
rs7537273	0.91[ASN][1000 genomes]
rs7537321	0.91[ASN][1000 genomes]
rs7537398	0.91[ASN][1000 genomes]
rs7540040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548938	0.91[ASN][1000 genomes]
rs7548946	0.91[ASN][1000 genomes]
rs7549530	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333400	0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28531901	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165593800-165594000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links