Variant report

Variant	rs7549530
Chromosome Location	chr1:165598646-165598647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:165598527-165598662	MCF10A-Er-Src	breast:	n/a	n/a
2	JUN	chr1:165598443-165602604	K562	blood:	n/a	chr1:165601294-165601301 chr1:165601292-165601301 chr1:165601130-165601140 chr1:165601292-165601302 chr1:165599593-165599602 chr1:165601292-165601302 chr1:165601697-165601708 chr1:165599071-165599085

No.	Distal block	Cell Line	Cell type
1	chr1:165598510..165600017-chr1:165872095..165874763,2	K562	blood:
2	chr1:165597760..165600070-chr1:165736723..165738244,2	K562	blood:
3	chr1:165595783..165598843-chr1:165605260..165607101,3	K562	blood:
4	chr1:165597575..165602245-chr1:165617678..165620274,4	K562	blood:
5	chr1:165598109..165601268-chr1:165795469..165798298,3	MCF-7	breast:
6	chr1:165598557..165602218-chr1:165613054..165616011,3	K562	blood:
7	chr1:165597269..165598908-chr1:165600492..165602238,2	MCF-7	breast:

Variant related genes	Relation type
MGST3	TF binding region
ENSG00000143179	Chromatin interaction
ENSG00000143198	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000224358	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11801981	0.85[CEU][hapmap]
rs11808590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11809495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11809976	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1415500	0.91[ASN][1000 genomes]
rs1415501	0.91[ASN][1000 genomes]
rs1415502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1832296	0.91[ASN][1000 genomes]
rs1913838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28531901	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28682307	0.91[ASN][1000 genomes]
rs4504864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4626863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57058706	0.86[EUR][1000 genomes]
rs57098971	0.91[ASN][1000 genomes]
rs57256442	0.82[EUR][1000 genomes]
rs57831387	0.91[ASN][1000 genomes]
rs57947536	0.91[ASN][1000 genomes]
rs58754537	0.91[ASN][1000 genomes]
rs60755789	0.91[ASN][1000 genomes]
rs61557603	0.84[EUR][1000 genomes]
rs61800371	0.91[EUR][1000 genomes]
rs61800391	0.91[EUR][1000 genomes]
rs61804068	0.86[EUR][1000 genomes]
rs61804069	0.86[EUR][1000 genomes]
rs6426921	0.91[ASN][1000 genomes]
rs6426923	0.91[ASN][1000 genomes]
rs6426924	0.91[ASN][1000 genomes]
rs6664209	0.91[EUR][1000 genomes]
rs6669092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6679779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6689822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6689895	0.91[ASN][1000 genomes]
rs6689903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6689926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6690104	1.00[ASN][1000 genomes]
rs6690679	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6693448	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6693471	0.91[ASN][1000 genomes]
rs6693483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6701006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6703260	0.91[ASN][1000 genomes]
rs7516587	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7521640	0.90[EUR][1000 genomes]
rs7524970	0.86[EUR][1000 genomes]
rs7537008	0.91[ASN][1000 genomes]
rs7537273	0.91[ASN][1000 genomes]
rs7537321	0.91[ASN][1000 genomes]
rs7537398	0.91[ASN][1000 genomes]
rs7540040	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548938	0.91[ASN][1000 genomes]
rs7548946	0.91[ASN][1000 genomes]
rs9333400	0.90[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165594000-165599000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165595200-165599000	Enhancers	K562	blood
3	chr1:165596000-165599400	Enhancers	Fetal Intestine Small	intestine
4	chr1:165596400-165599400	Enhancers	Fetal Intestine Large	intestine
5	chr1:165597200-165599200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:165597200-165599200	Enhancers	Fetal Heart	heart
7	chr1:165597600-165599000	Enhancers	HepG2	liver
8	chr1:165597800-165599200	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:165597800-165599400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:165598000-165599200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:165598000-165599200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:165598400-165598800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:165598400-165598800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:165598400-165598800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr1:165598400-165599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:165598400-165599200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr1:165598400-165600800	Active TSS	Fetal Brain Male	brain
18	chr1:165598600-165599000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:165598600-165599000	Enhancers	Dnd41	blood
20	chr1:165598600-165599200	Enhancers	Fetal Brain Female	brain
21	chr1:165598600-165599400	Enhancers	Primary hematopoietic stem cells	blood
22	chr1:165598600-165599400	Enhancers	Skeletal Muscle Male	skeletal muscle

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