Variant report

Variant	rs6693448
Chromosome Location	chr1:165597508-165597509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165589382..165591602-chr1:165595692..165598482,2	K562	blood:
2	chr1:165595783..165597532-chr1:165605260..165606907,2	K562	blood:
3	chr1:165595783..165598843-chr1:165605260..165607101,3	K562	blood:
4	chr1:165597269..165598908-chr1:165600492..165602238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11799886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11799903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11801981	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs11806754	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs16847487	1.00[JPT][hapmap]
rs16847544	0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs28531901	0.96[EUR][1000 genomes]
rs4626863	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs57058706	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57256442	0.85[EUR][1000 genomes]
rs61557603	0.83[EUR][1000 genomes]
rs61800371	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61800391	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61804068	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61804069	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6664209	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672982	1.00[ASN][1000 genomes]
rs6682771	1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs6686643	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6693483	0.94[EUR][1000 genomes]
rs6695758	1.00[JPT][hapmap]
rs7516587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521640	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524970	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7540040	0.96[EUR][1000 genomes]
rs7549530	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7554034	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9333378	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs9333400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333432	1.00[ASN][1000 genomes]
rs9333433	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9333464	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9333471	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs957644	1.00[ASN][1000 genomes]
rs959617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165594000-165599000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165595200-165599000	Enhancers	K562	blood
3	chr1:165595600-165598600	Weak transcription	Fetal Brain Female	brain
4	chr1:165596000-165599400	Enhancers	Fetal Intestine Small	intestine
5	chr1:165596400-165599400	Enhancers	Fetal Intestine Large	intestine
6	chr1:165597000-165598000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:165597200-165599200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:165597200-165599200	Enhancers	Fetal Heart	heart
9	chr1:165597400-165597600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:165597400-165597600	Bivalent Enhancer	HepG2	liver
11	chr1:165597400-165598000	Enhancers	Rectal Mucosa Donor 31	rectum

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