Variant report

Variant	rs7516587
Chromosome Location	chr1:165598884-165598885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:165598861-165601697	SK-N-SH	brain:	n/a	n/a
2	JUN	chr1:165598443-165602604	K562	blood:	n/a	chr1:165601294-165601301 chr1:165601292-165601301 chr1:165601130-165601140 chr1:165601292-165601302 chr1:165599593-165599602 chr1:165601292-165601302 chr1:165601697-165601708 chr1:165599071-165599085
3	HCFC1	chr1:165598793-165601947	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:165598732..165600312-chr1:165601060..165603402,2	MCF-7	breast:
2	chr1:165598510..165600017-chr1:165872095..165874763,2	K562	blood:
3	chr1:165598675..165601057-chr1:165860826..165863471,2	K562	blood:
4	chr1:165597760..165600070-chr1:165736723..165738244,2	K562	blood:
5	chr1:165597575..165602245-chr1:165617678..165620274,4	K562	blood:
6	chr1:165598109..165601268-chr1:165795469..165798298,3	MCF-7	breast:
7	chr1:165598557..165602218-chr1:165613054..165616011,3	K562	blood:
8	chr1:165597269..165598908-chr1:165600492..165602238,2	MCF-7	breast:

Variant related genes	Relation type
MGST3	TF binding region
ENSG00000143198	Chromatin interaction
ENSG00000224358	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11799886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11799903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11801981	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs11806754	1.00[JPT][hapmap]
rs16847487	1.00[JPT][hapmap]
rs16847544	1.00[JPT][hapmap]
rs28531901	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4626863	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs57058706	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57256442	0.83[EUR][1000 genomes]
rs61557603	0.85[EUR][1000 genomes]
rs61800371	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61800391	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61804068	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61804069	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6664209	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672982	1.00[ASN][1000 genomes]
rs6682771	1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs6686643	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6693448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693483	0.99[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6695758	1.00[JPT][hapmap]
rs7521640	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524970	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7540040	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7549530	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7554034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9333378	1.00[JPT][hapmap]
rs9333400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9333432	1.00[ASN][1000 genomes]
rs9333433	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9333464	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9333471	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs957644	1.00[ASN][1000 genomes]
rs959617	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165594000-165599000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:165595200-165599000	Enhancers	K562	blood
3	chr1:165596000-165599400	Enhancers	Fetal Intestine Small	intestine
4	chr1:165596400-165599400	Enhancers	Fetal Intestine Large	intestine
5	chr1:165597200-165599200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:165597200-165599200	Enhancers	Fetal Heart	heart
7	chr1:165597600-165599000	Enhancers	HepG2	liver
8	chr1:165597800-165599200	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:165597800-165599400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:165598000-165599200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr1:165598000-165599200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:165598400-165599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:165598400-165599200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr1:165598400-165600800	Active TSS	Fetal Brain Male	brain
15	chr1:165598600-165599000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:165598600-165599000	Enhancers	Dnd41	blood
17	chr1:165598600-165599200	Enhancers	Fetal Brain Female	brain
18	chr1:165598600-165599400	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:165598600-165599400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:165598800-165599000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr1:165598800-165599000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:165598800-165599000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr1:165598800-165599000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:165598800-165599000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:165598800-165599000	Enhancers	HMEC	breast
26	chr1:165598800-165599200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:165598800-165599200	Enhancers	Stomach Mucosa	stomach
28	chr1:165598800-165599200	Enhancers	Monocytes-CD14+_RO01746	blood

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