The 2.0 version of rSNPBase

Variant report

Variant rs57259394
Chromosome Location chr1:150133701-150133702
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150123200-150135400 Weak transcription A549 lung
2 chr1:150123400-150134400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:150123400-150134400 Weak transcription NHEK skin
4 chr1:150123800-150134200 Weak transcription HMEC breast
5 chr1:150123800-150134600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:150129800-150134600 Weak transcription Brain Angular Gyrus brain
7 chr1:150130000-150133800 Weak transcription Brain Substantia Nigra brain
8 chr1:150130200-150134600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
9 chr1:150130200-150134600 Weak transcription Psoas Muscle Psoas
10 chr1:150130400-150133800 Genic enhancers Fetal Lung lung
11 chr1:150130800-150133800 Genic enhancers Fetal Stomach stomach
12 chr1:150131200-150134400 Weak transcription HepG2 liver
13 chr1:150131400-150134600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
14 chr1:150131600-150133800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
15 chr1:150131600-150135000 Enhancers Ovary ovary
16 chr1:150131800-150133800 Flanking Active TSS Primary hematopoietic stem cells blood
17 chr1:150131800-150135400 Enhancers Primary T helper naive cells from peripheral blood blood
18 chr1:150131800-150135600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
19 chr1:150131800-150135800 Weak transcription Esophagus oesophagus
20 chr1:150131800-150136000 Flanking Active TSS Primary B cells from cord blood blood
21 chr1:150131800-150138600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
22 chr1:150132000-150134000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:150132000-150134000 Weak transcription Lung lung
24 chr1:150132000-150134200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
25 chr1:150132000-150134200 Weak transcription Brain Inferior Temporal Lobe brain
26 chr1:150132000-150134800 Enhancers Primary T helper 17 cells PMA-I stimulated --
27 chr1:150132000-150136000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr1:150132200-150133800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:150132200-150134000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
30 chr1:150132200-150134000 Weak transcription Right Ventricle heart
31 chr1:150132200-150134000 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:150132200-150134000 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:150132200-150134400 Weak transcription Liver Liver
34 chr1:150132200-150135000 Enhancers Duodenum Mucosa Duodenum
35 chr1:150132200-150135800 Enhancers Primary T killer naive cells fromperipheralblood blood
36 chr1:150132200-150135800 Enhancers Primary T killer memory cells from peripheral blood blood
37 chr1:150132200-150136200 Enhancers Primary T helper naive cells fromperipheralblood blood
38 chr1:150132200-150136200 Enhancers HUVEC blood vessel
39 chr1:150132200-150136400 Enhancers Placenta Placenta
40 chr1:150132200-150136800 Enhancers Primary T helper cells PMA-I stimulated --
41 chr1:150132400-150134000 Weak transcription Stomach Mucosa stomach
42 chr1:150132400-150134400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:150132400-150134600 Enhancers Primary T cells from cord blood blood
44 chr1:150132400-150134600 Weak transcription Aorta Aorta
45 chr1:150132400-150135600 Enhancers Primary T cells fromperipheralblood blood
46 chr1:150132400-150136200 Enhancers Primary T helper cells fromperipheralblood blood
47 chr1:150132400-150138200 Weak transcription Gastric stomach
48 chr1:150132400-150141200 Weak transcription Primary T regulatory cells fromperipheralblood blood
49 chr1:150132600-150133800 Genic enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr1:150132600-150134400 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015