The 2.0 version of rSNPBase

Variant report

Variant rs55730068
Chromosome Location chr1:150037636-150037637
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150018200-150038600 Weak transcription Fetal Muscle Trunk muscle
2 chr1:150022800-150038600 Weak transcription Brain Inferior Temporal Lobe brain
3 chr1:150032600-150037800 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:150032800-150038600 Weak transcription Fetal Intestine Small intestine
5 chr1:150033800-150038800 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr1:150034000-150038600 Weak transcription Right Atrium heart
7 chr1:150034200-150038000 Weak transcription Stomach Mucosa stomach
8 chr1:150034200-150038000 Weak transcription Stomach Smooth Muscle stomach
9 chr1:150034200-150038600 Weak transcription Brain Anterior Caudate brain
10 chr1:150034200-150038600 Weak transcription Fetal Stomach stomach
11 chr1:150034400-150038200 Weak transcription Fetal Kidney kidney
12 chr1:150034400-150038600 Weak transcription Fetal Thymus thymus
13 chr1:150035600-150039000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:150036600-150038600 Weak transcription Fetal Muscle Leg muscle
15 chr1:150036600-150038800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:150036800-150037800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:150037000-150037800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:150037000-150037800 Enhancers GM12878-XiMat blood
19 chr1:150037000-150037800 Enhancers NHLF lung
20 chr1:150037000-150038000 Enhancers HSMMtube muscle
21 chr1:150037000-150038000 Enhancers NH-A brain
22 chr1:150037000-150038000 Enhancers NHEK skin
23 chr1:150037000-150038200 Enhancers Primary monocytes fromperipheralblood blood
24 chr1:150037000-150038200 Enhancers HepG2 liver
25 chr1:150037000-150038400 Enhancers Cortex derived primary cultured neurospheres brain
26 chr1:150037000-150038600 Enhancers HSMM muscle
27 chr1:150037000-150038600 Enhancers Monocytes-CD14+_RO01746 blood
28 chr1:150037200-150037800 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr1:150037200-150037800 Weak transcription Fetal Brain Male brain
30 chr1:150037200-150038000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:150037200-150038000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr1:150037200-150038000 Enhancers A549 lung
33 chr1:150037200-150038000 Enhancers Osteobl bone
34 chr1:150037200-150038200 Enhancers Fetal Heart heart
35 chr1:150037200-150038400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:150037200-150038400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:150037200-150038400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:150037200-150038600 Enhancers Primary hematopoietic stem cells short term culture blood
39 chr1:150037200-150038600 Enhancers Primary T helper cells PMA-I stimulated --
40 chr1:150037200-150038600 Enhancers Colon Smooth Muscle Colon
41 chr1:150037200-150038600 Enhancers Rectal Smooth Muscle rectum
42 chr1:150037200-150038600 Enhancers Hela-S3 cervix
43 chr1:150037200-150038600 Enhancers NHDF-Ad bronchial
44 chr1:150037200-150038800 Enhancers Skeletal Muscle Male skeletal muscle
45 chr1:150037400-150037800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr1:150037400-150037800 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:150037400-150038000 Enhancers Muscle Satellite Cultured Cells --
48 chr1:150037400-150038400 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:150037400-150038600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:150037400-150038600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015