Variant report

Variant	rs74124293
Chromosome Location	chr1:150010902-150010903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149858082..149859962-chr1:150009654..150012452,3	K562	blood:
2	chr1:149971779..149974437-chr1:150010211..150012931,2	MCF-7	breast:
3	chr1:150005167..150006817-chr1:150009728..150012726,2	K562	blood:
4	chr1:149980827..149982338-chr1:150010206..150012167,2	K562	blood:

Variant related genes	Relation type
ENSG00000184678	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs55675915	0.91[AFR][1000 genomes]
rs55730068	0.95[AFR][1000 genomes]
rs55782319	0.85[AFR][1000 genomes]
rs55917036	0.95[AFR][1000 genomes]
rs55958060	0.91[AFR][1000 genomes]
rs56003355	0.91[AFR][1000 genomes]
rs56203821	0.95[AFR][1000 genomes]
rs56219570	0.91[AFR][1000 genomes]
rs56235561	0.95[AFR][1000 genomes]
rs56375233	0.95[AFR][1000 genomes]
rs56402847	0.88[AFR][1000 genomes]
rs56696553	0.95[AFR][1000 genomes]
rs56775659	0.95[AFR][1000 genomes]
rs56894379	0.95[AFR][1000 genomes]
rs57289852	0.95[AFR][1000 genomes]
rs57459405	0.95[AFR][1000 genomes]
rs57545744	0.87[AFR][1000 genomes]
rs57761276	0.91[AFR][1000 genomes]
rs58363747	0.91[AFR][1000 genomes]
rs58507490	0.91[AFR][1000 genomes]
rs58856811	0.95[AFR][1000 genomes]
rs58978911	0.95[AFR][1000 genomes]
rs59195173	0.95[AFR][1000 genomes]
rs59354740	0.95[AFR][1000 genomes]
rs59916811	0.82[AFR][1000 genomes]
rs60442181	0.95[AFR][1000 genomes]
rs60906570	0.95[AFR][1000 genomes]
rs61381734	0.95[AFR][1000 genomes]
rs72694943	0.83[AFR][1000 genomes]
rs7339920	0.95[AFR][1000 genomes]
rs7339921	0.95[AFR][1000 genomes]
rs7411583	0.95[AFR][1000 genomes]
rs74124296	0.95[AFR][1000 genomes]
rs74124298	0.95[AFR][1000 genomes]
rs74124299	0.95[AFR][1000 genomes]
rs74124302	0.95[AFR][1000 genomes]
rs74124303	0.95[AFR][1000 genomes]
rs74124304	0.95[AFR][1000 genomes]
rs74124305	0.95[AFR][1000 genomes]
rs74124307	0.87[AFR][1000 genomes]
rs74124312	0.93[AFR][1000 genomes]
rs74124313	0.95[AFR][1000 genomes]
rs74124314	0.83[AFR][1000 genomes]
rs74124315	0.95[AFR][1000 genomes]
rs74124317	0.91[AFR][1000 genomes]
rs74124322	0.91[AFR][1000 genomes]
rs74124326	0.91[AFR][1000 genomes]
rs74124327	0.91[AFR][1000 genomes]
rs74124329	0.91[AFR][1000 genomes]
rs74124331	0.91[AFR][1000 genomes]
rs74124332	0.91[AFR][1000 genomes]
rs74124334	0.91[AFR][1000 genomes]
rs74124337	0.91[AFR][1000 genomes]
rs74127403	0.95[AFR][1000 genomes]
rs74127404	0.95[AFR][1000 genomes]
rs74127409	0.95[AFR][1000 genomes]
rs74127413	0.95[AFR][1000 genomes]
rs74127422	0.95[AFR][1000 genomes]
rs74127423	0.95[AFR][1000 genomes]
rs74127427	0.95[AFR][1000 genomes]
rs74127429	0.95[AFR][1000 genomes]
rs74127430	0.95[AFR][1000 genomes]
rs74127438	0.95[AFR][1000 genomes]
rs74127439	0.87[AFR][1000 genomes]
rs74127440	0.95[AFR][1000 genomes]
rs74127441	0.95[AFR][1000 genomes]
rs74127443	0.95[AFR][1000 genomes]
rs74127444	0.95[AFR][1000 genomes]
rs74127445	0.95[AFR][1000 genomes]
rs74127446	0.95[AFR][1000 genomes]
rs74127447	0.95[AFR][1000 genomes]
rs74127448	0.95[AFR][1000 genomes]
rs74127449	0.95[AFR][1000 genomes]
rs74127450	0.95[AFR][1000 genomes]
rs74127451	0.95[AFR][1000 genomes]
rs74127452	0.95[AFR][1000 genomes]
rs74127453	0.95[AFR][1000 genomes]
rs74127454	0.95[AFR][1000 genomes]
rs74127455	0.89[AFR][1000 genomes]
rs74127456	0.95[AFR][1000 genomes]
rs74127457	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
3	chr1:150003800-150022400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:150006600-150022400	Weak transcription	Brain Hippocampus Middle	brain

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