The 2.0 version of rSNPBase

Variant report

Variant rs56235561
Chromosome Location chr1:150082466-150082467
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150040200-150090800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:150040400-150082800 Weak transcription Small Intestine intestine
3 chr1:150040400-150086800 Weak transcription Esophagus oesophagus
4 chr1:150040400-150121400 Weak transcription Pancreas Pancrea
5 chr1:150040600-150092000 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr1:150041000-150114400 Weak transcription Right Ventricle heart
7 chr1:150042200-150086600 Weak transcription Gastric stomach
8 chr1:150042600-150090800 Weak transcription Stomach Mucosa stomach
9 chr1:150050600-150084800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr1:150052000-150116800 Weak transcription Spleen Spleen
11 chr1:150055000-150086200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:150055000-150100600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:150055000-150120800 Weak transcription Aorta Aorta
14 chr1:150055200-150096000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr1:150055200-150104800 Weak transcription Brain Cingulate Gyrus brain
16 chr1:150056600-150086400 Weak transcription H1 Cell Line embryonic stem cell
17 chr1:150057000-150084800 Weak transcription A549 lung
18 chr1:150060000-150096000 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:150061000-150116800 Weak transcription Ovary ovary
20 chr1:150061800-150084800 Weak transcription Left Ventricle heart
21 chr1:150063800-150083400 Weak transcription Stomach Smooth Muscle stomach
22 chr1:150066200-150086600 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:150066200-150087800 Weak transcription HSMMtube muscle
24 chr1:150066200-150096600 Weak transcription Rectal Smooth Muscle rectum
25 chr1:150067000-150113200 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr1:150067200-150083200 Weak transcription Brain Anterior Caudate brain
27 chr1:150067200-150086400 Weak transcription HMEC breast
28 chr1:150067200-150101200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:150067400-150086800 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr1:150067400-150087200 Weak transcription iPS-20b Cell Line embryonic stem cell
31 chr1:150067400-150121200 Weak transcription Colonic Mucosa Colon
32 chr1:150067600-150083200 Weak transcription Brain Hippocampus Middle brain
33 chr1:150068400-150084800 Weak transcription Psoas Muscle Psoas
34 chr1:150068600-150083400 Weak transcription K562 blood
35 chr1:150068600-150084800 Weak transcription Muscle Satellite Cultured Cells --
36 chr1:150069000-150086800 Weak transcription Brain Inferior Temporal Lobe brain
37 chr1:150069000-150093600 Weak transcription NHEK skin
38 chr1:150069000-150113800 Weak transcription Fetal Kidney kidney
39 chr1:150069000-150121000 Weak transcription NHLF lung
40 chr1:150070400-150084600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
41 chr1:150070400-150084800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:150070400-150087200 Weak transcription Duodenum Mucosa Duodenum
43 chr1:150070800-150084800 Weak transcription Brain Germinal Matrix brain
44 chr1:150071000-150121000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:150071200-150082600 Weak transcription NH-A brain
46 chr1:150071200-150083400 Weak transcription HSMM muscle
47 chr1:150071200-150084600 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr1:150071200-150086400 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:150071200-150120600 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:150071400-150092200 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015