Variant report

Variant	rs57292669
Chromosome Location	chr15:75272560-75272561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28475336	1.00[AMR][1000 genomes]
rs28624413	1.00[AMR][1000 genomes]
rs34882682	1.00[AMR][1000 genomes]
rs57201524	1.00[AMR][1000 genomes]
rs57703835	1.00[AMR][1000 genomes]
rs57961156	1.00[AMR][1000 genomes]
rs58881240	1.00[AMR][1000 genomes]
rs59072564	1.00[AMR][1000 genomes]
rs59430331	1.00[AMR][1000 genomes]
rs59434261	1.00[AMR][1000 genomes]
rs59507052	1.00[AMR][1000 genomes]
rs60318248	1.00[AMR][1000 genomes]
rs60555940	1.00[AMR][1000 genomes]
rs60568451	1.00[AMR][1000 genomes]
rs60910940	1.00[AMR][1000 genomes]
rs61398553	1.00[AMR][1000 genomes]
rs7173734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1612	chr15:75247725-75281284	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75270200-75276200	Weak transcription	HSMM	muscle
2	chr15:75270600-75276200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:75271200-75276000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:75271400-75276200	Weak transcription	A549	lung
5	chr15:75271400-75276200	Weak transcription	NHDF-Ad	bronchial
6	chr15:75272000-75276200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:75272200-75273400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:75272200-75274600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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