Variant report

Variant	rs60555940
Chromosome Location	chr15:75461567-75461568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75321516..75324460-chr15:75459942..75461573,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28475336	1.00[AMR][1000 genomes]
rs28624413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34882682	1.00[AMR][1000 genomes]
rs57201524	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57292669	1.00[AMR][1000 genomes]
rs57703835	1.00[AMR][1000 genomes]
rs57961156	1.00[AMR][1000 genomes]
rs58122506	1.00[AMR][1000 genomes]
rs58881240	1.00[AMR][1000 genomes]
rs58979221	1.00[AMR][1000 genomes]
rs59072564	1.00[AMR][1000 genomes]
rs59430331	1.00[AMR][1000 genomes]
rs59434261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59507052	1.00[AMR][1000 genomes]
rs60318248	1.00[AMR][1000 genomes]
rs60568451	1.00[AMR][1000 genomes]
rs60910940	1.00[AMR][1000 genomes]
rs61217612	1.00[AMR][1000 genomes]
rs61398553	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61700024	1.00[AMR][1000 genomes]
rs7173734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75451400-75461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75454200-75470000	Weak transcription	Thymus	Thymus
3	chr15:75455400-75463200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:75457400-75462800	Weak transcription	Lung	lung
5	chr15:75460400-75463000	Weak transcription	HUVEC	blood vessel
6	chr15:75460600-75463000	Weak transcription	Placenta	Placenta
7	chr15:75460600-75463000	Weak transcription	NH-A	brain
8	chr15:75460600-75464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:75460800-75461800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:75460800-75462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:75460800-75462600	Weak transcription	HSMM	muscle
12	chr15:75460800-75462800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:75460800-75462800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:75460800-75462800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr15:75460800-75462800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:75460800-75462800	Weak transcription	Osteobl	bone
17	chr15:75461000-75462600	Weak transcription	Hela-S3	cervix
18	chr15:75461000-75463200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:75461200-75462400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:75461200-75462800	Weak transcription	K562	blood
21	chr15:75461200-75465600	Enhancers	HSMMtube	muscle
22	chr15:75461400-75461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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