Variant report

Variant	rs60568451
Chromosome Location	chr15:75437621-75437622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75431213..75434061-chr15:75436868..75439770,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28475336	1.00[AMR][1000 genomes]
rs28624413	1.00[AMR][1000 genomes]
rs34882682	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57201524	1.00[AMR][1000 genomes]
rs57292669	1.00[AMR][1000 genomes]
rs57703835	1.00[AMR][1000 genomes]
rs57961156	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58122506	1.00[AMR][1000 genomes]
rs58881240	1.00[AMR][1000 genomes]
rs58979221	1.00[AMR][1000 genomes]
rs59072564	1.00[AMR][1000 genomes]
rs59430331	1.00[AMR][1000 genomes]
rs59434261	1.00[AMR][1000 genomes]
rs59507052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60318248	1.00[AMR][1000 genomes]
rs60555940	1.00[AMR][1000 genomes]
rs60910940	1.00[AMR][1000 genomes]
rs61217612	1.00[AMR][1000 genomes]
rs61398553	1.00[AMR][1000 genomes]
rs61700024	1.00[AMR][1000 genomes]
rs7173734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75434800-75438000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
2	chr15:75434800-75438400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:75434800-75438400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:75434800-75438400	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr15:75435000-75438800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
6	chr15:75435600-75443800	Weak transcription	Fetal Heart	heart
7	chr15:75436200-75438400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:75436200-75438600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:75436400-75437800	ZNF genes & repeats	Dnd41	blood
10	chr15:75436400-75438200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr15:75436600-75438000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:75436800-75438400	Flanking Active TSS	Hela-S3	cervix
13	chr15:75437000-75438600	ZNF genes & repeats	Spleen	Spleen
14	chr15:75437200-75438200	Flanking Active TSS	A549	lung
15	chr15:75437200-75438400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr15:75437200-75438400	Flanking Active TSS	HepG2	liver
17	chr15:75437600-75437800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:75437600-75438000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:75437600-75438400	Enhancers	HMEC	breast

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