Variant report

Variant	rs57703835
Chromosome Location	chr15:75487570-75487571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr15:75487477-75488382	H1-neurons	neurons:	n/a	chr15:75487891-75487904 chr15:75487580-75487593 chr15:75488299-75488319
2	MXI1	chr15:75487445-75488668	SK-N-SH	brain:	n/a	chr15:75488004-75488013 chr15:75488059-75488068

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75487202..75491376-chr15:75491587..75495203,5	K562	blood:

Variant related genes	Relation type
C15orf39	TF binding region
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28475336	1.00[AMR][1000 genomes]
rs28624413	1.00[AMR][1000 genomes]
rs34882682	1.00[AMR][1000 genomes]
rs57201524	1.00[AMR][1000 genomes]
rs57292669	1.00[AMR][1000 genomes]
rs57536322	0.92[AFR][1000 genomes]
rs57961156	1.00[AMR][1000 genomes]
rs58122506	1.00[AMR][1000 genomes]
rs58881240	1.00[AMR][1000 genomes]
rs58979221	1.00[AMR][1000 genomes]
rs59072564	1.00[AMR][1000 genomes]
rs59430331	1.00[AMR][1000 genomes]
rs59434261	1.00[AMR][1000 genomes]
rs59507052	1.00[AMR][1000 genomes]
rs60318248	1.00[AMR][1000 genomes]
rs60555940	1.00[AMR][1000 genomes]
rs60568451	1.00[AMR][1000 genomes]
rs60910940	1.00[AMR][1000 genomes]
rs61217612	1.00[AMR][1000 genomes]
rs61398553	1.00[AMR][1000 genomes]
rs61700024	1.00[AMR][1000 genomes]
rs7173734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75473000-75487600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:75475400-75487800	Weak transcription	Right Atrium	heart
3	chr15:75475600-75487600	Weak transcription	Pancreas	Pancrea
4	chr15:75477200-75492600	Weak transcription	Spleen	Spleen
5	chr15:75483800-75487600	Weak transcription	Fetal Intestine Small	intestine
6	chr15:75484000-75487600	Weak transcription	Left Ventricle	heart
7	chr15:75484200-75491600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:75484200-75492800	Enhancers	Placenta	Placenta
9	chr15:75484600-75487600	Weak transcription	Ovary	ovary
10	chr15:75485000-75487600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75485600-75491200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr15:75485800-75487600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:75485800-75487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:75485800-75487600	Weak transcription	Fetal Lung	lung
15	chr15:75486000-75489200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:75486200-75487600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:75486200-75489200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr15:75486200-75490000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr15:75486600-75487600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:75486600-75487600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:75486600-75487600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:75486600-75487600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:75486600-75487600	Weak transcription	Brain Germinal Matrix	brain
24	chr15:75486600-75487800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:75486800-75487800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:75487000-75488000	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr15:75487000-75488600	Enhancers	HSMMtube	muscle
28	chr15:75487000-75488800	Enhancers	Primary hematopoietic stem cells	blood
29	chr15:75487000-75490000	Enhancers	Fetal Stomach	stomach
30	chr15:75487000-75491200	Enhancers	Fetal Heart	heart
31	chr15:75487200-75487600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr15:75487200-75487800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:75487400-75489600	Enhancers	Fetal Thymus	thymus
34	chr15:75487400-75491000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links