Variant report

Variant	rs59072564
Chromosome Location	chr15:75318706-75318707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75318360-75319241	SK-N-MC	brain:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
2	chr15:75314438..75320960-chr15:75334023..75339188,6	K562	blood:
3	chr15:75314704..75323577-chr15:75491522..75500562,29	MCF-7	breast:
4	chr15:75316003..75319633-chr15:75325409..75329451,5	MCF-7	breast:
5	chr15:75316059..75318846-chr15:75482061..75483763,2	K562	blood:
6	chr15:75300826..75305111-chr15:75313603..75318752,6	MCF-7	breast:
7	chr15:75285958..75287550-chr15:75318167..75319943,2	MCF-7	breast:
8	chr15:75247469..75252493-chr15:75314645..75318771,7	MCF-7	breast:
9	chr15:75316439..75318954-chr15:75442453..75445329,2	K562	blood:
10	chr15:75314737..75326433-chr15:75490770..75500610,30	K562	blood:
11	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:
12	chr15:75318584..75321988-chr15:75334747..75339188,4	K562	blood:
13	chr15:75317681..75319554-chr15:75468092..75469844,2	MCF-7	breast:

No data

Variant related genes	Relation type
PPCDC	TF binding region
ENSG00000138621	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000178718	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28475336	1.00[AMR][1000 genomes]
rs28624413	1.00[AMR][1000 genomes]
rs34882682	1.00[AMR][1000 genomes]
rs57201524	1.00[AMR][1000 genomes]
rs57292669	1.00[AMR][1000 genomes]
rs57703835	1.00[AMR][1000 genomes]
rs57961156	1.00[AMR][1000 genomes]
rs58881240	1.00[AMR][1000 genomes]
rs59430331	1.00[AMR][1000 genomes]
rs59434261	1.00[AMR][1000 genomes]
rs59507052	1.00[AMR][1000 genomes]
rs60318248	1.00[AMR][1000 genomes]
rs60555940	1.00[AMR][1000 genomes]
rs60568451	1.00[AMR][1000 genomes]
rs60910940	1.00[AMR][1000 genomes]
rs61398553	1.00[AMR][1000 genomes]
rs7173734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv527237	chr15:75305040-75321262	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75316600-75321000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75316600-75321000	Weak transcription	Brain Substantia Nigra	brain
3	chr15:75316600-75321600	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:75316600-75321800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:75316600-75336800	Weak transcription	Fetal Brain Female	brain
6	chr15:75316800-75318800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:75316800-75318800	Enhancers	Fetal Thymus	thymus
8	chr15:75316800-75320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:75316800-75320200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:75316800-75320400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:75316800-75320600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:75316800-75320800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:75316800-75321000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:75316800-75321000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:75316800-75321400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:75316800-75321400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:75316800-75321400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:75316800-75321400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:75316800-75321400	Weak transcription	HUVEC	blood vessel
20	chr15:75316800-75321600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:75316800-75321600	Weak transcription	HMEC	breast
22	chr15:75316800-75321600	Weak transcription	Osteobl	bone
23	chr15:75316800-75321800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:75316800-75321800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:75316800-75321800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:75316800-75321800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:75316800-75321800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:75316800-75321800	Weak transcription	Esophagus	oesophagus
29	chr15:75316800-75321800	Weak transcription	Gastric	stomach
30	chr15:75316800-75321800	Weak transcription	Left Ventricle	heart
31	chr15:75316800-75321800	Weak transcription	Ovary	ovary
32	chr15:75316800-75321800	Weak transcription	Right Atrium	heart
33	chr15:75316800-75321800	Weak transcription	Right Ventricle	heart
34	chr15:75316800-75321800	Weak transcription	Small Intestine	intestine
35	chr15:75316800-75321800	Weak transcription	HSMM	muscle
36	chr15:75316800-75321800	Weak transcription	NH-A	brain
37	chr15:75316800-75321800	Weak transcription	NHDF-Ad	bronchial
38	chr15:75316800-75321800	Weak transcription	NHLF	lung
39	chr15:75316800-75322000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:75316800-75322000	Weak transcription	Brain Angular Gyrus	brain
41	chr15:75316800-75322000	Weak transcription	Fetal Brain Male	brain
42	chr15:75316800-75322000	Weak transcription	Psoas Muscle	Psoas
43	chr15:75316800-75322000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:75316800-75322600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:75316800-75322800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr15:75316800-75338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:75317000-75321800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:75317000-75321800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:75317000-75321800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:75317000-75321800	Weak transcription	Muscle Satellite Cultured Cells	--

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