Variant report

Variant	rs57961156
Chromosome Location	chr15:75428975-75428976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28475336	1.00[AMR][1000 genomes]
rs28624413	1.00[AMR][1000 genomes]
rs34882682	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57201524	1.00[AMR][1000 genomes]
rs57292669	1.00[AMR][1000 genomes]
rs57703835	1.00[AMR][1000 genomes]
rs58122506	1.00[AMR][1000 genomes]
rs58881240	1.00[AMR][1000 genomes]
rs58979221	1.00[AMR][1000 genomes]
rs59072564	1.00[AMR][1000 genomes]
rs59430331	1.00[AMR][1000 genomes]
rs59434261	1.00[AMR][1000 genomes]
rs59507052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60318248	1.00[AMR][1000 genomes]
rs60555940	1.00[AMR][1000 genomes]
rs60568451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60910940	1.00[AMR][1000 genomes]
rs61217612	1.00[AMR][1000 genomes]
rs61398553	1.00[AMR][1000 genomes]
rs61700024	1.00[AMR][1000 genomes]
rs7173734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75401200-75430600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75412800-75433600	Weak transcription	Aorta	Aorta
3	chr15:75417800-75430600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:75423400-75431600	Weak transcription	Lung	lung
5	chr15:75427800-75429400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:75427800-75431800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:75428000-75429800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:75428000-75430800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:75428000-75431200	Enhancers	HepG2	liver
10	chr15:75428200-75429000	Flanking Active TSS	GM12878-XiMat	blood
11	chr15:75428400-75429000	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:75428400-75429000	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:75428400-75429600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr15:75428600-75429000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:75428800-75432600	Weak transcription	Right Atrium	heart

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