Variant report

Variant	rs57453942
Chromosome Location	chr6:39513251-39513252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58442613	1.00[AMR][1000 genomes]
rs6904747	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930845	1.00[AMR][1000 genomes]
rs6931048	1.00[AMR][1000 genomes]
rs73412743	1.00[AMR][1000 genomes]
rs73412760	1.00[AMR][1000 genomes]
rs73414664	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414667	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414692	1.00[AMR][1000 genomes]
rs73424680	1.00[AMR][1000 genomes]
rs9688761	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689280	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39510000-39518200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:39511200-39516000	Weak transcription	Right Atrium	heart
3	chr6:39511400-39518200	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:39512400-39516000	Weak transcription	Fetal Lung	lung
5	chr6:39512600-39517400	Weak transcription	Fetal Stomach	stomach
6	chr6:39512800-39521600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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