Variant report

Variant	rs6931048
Chromosome Location	chr6:39508715-39508716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57453942	1.00[AMR][1000 genomes]
rs57623330	0.82[AFR][1000 genomes]
rs58442613	1.00[AMR][1000 genomes]
rs6904747	1.00[AMR][1000 genomes]
rs6930845	1.00[AMR][1000 genomes]
rs73412743	1.00[AMR][1000 genomes]
rs73412760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414664	1.00[AMR][1000 genomes]
rs73414667	1.00[AMR][1000 genomes]
rs73414692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424680	1.00[AMR][1000 genomes]
rs9688761	0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs9689280	0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39488600-39509400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:39495200-39511000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:39498400-39509400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:39498600-39510600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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