Variant report

Variant	rs73414692
Chromosome Location	chr6:39534972-39534973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57453942	1.00[AMR][1000 genomes]
rs57623330	0.84[AFR][1000 genomes]
rs58442613	1.00[AMR][1000 genomes]
rs6904747	1.00[AMR][1000 genomes]
rs6930845	1.00[AMR][1000 genomes]
rs6931048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412743	1.00[AMR][1000 genomes]
rs73412760	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414664	1.00[AMR][1000 genomes]
rs73414667	1.00[AMR][1000 genomes]
rs73424680	1.00[AMR][1000 genomes]
rs9688761	1.00[AMR][1000 genomes]
rs9689280	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39523200-39535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:39528600-39545400	Weak transcription	Brain Anterior Caudate	brain
3	chr6:39531400-39535600	Enhancers	Fetal Lung	lung
4	chr6:39532000-39536600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:39533200-39535400	Enhancers	NHDF-Ad	bronchial
6	chr6:39533600-39535200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:39533800-39536800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:39534400-39535200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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