Variant report

Variant	rs58442613
Chromosome Location	chr6:39421449-39421450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57453942	1.00[AMR][1000 genomes]
rs6904747	1.00[AMR][1000 genomes]
rs6930845	1.00[AMR][1000 genomes]
rs6931048	1.00[AMR][1000 genomes]
rs73412743	1.00[AMR][1000 genomes]
rs73412760	1.00[AMR][1000 genomes]
rs73414664	1.00[AMR][1000 genomes]
rs73414667	1.00[AMR][1000 genomes]
rs73414692	1.00[AMR][1000 genomes]
rs73424680	1.00[AMR][1000 genomes]
rs9688761	1.00[AMR][1000 genomes]
rs9689280	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv428145	chr6:39404129-39460795	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39419200-39421800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:39419200-39421800	Enhancers	Fetal Stomach	stomach
3	chr6:39419400-39421600	Enhancers	NHEK	skin
4	chr6:39419400-39421800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:39419400-39421800	Enhancers	HMEC	breast
6	chr6:39419600-39421600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:39420000-39421800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:39420000-39422000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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