Variant report

Variant	rs9689280
Chromosome Location	chr6:39520106-39520107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57453942	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442613	1.00[AMR][1000 genomes]
rs6904747	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930845	1.00[AMR][1000 genomes]
rs6931048	0.86[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs73412743	1.00[AMR][1000 genomes]
rs73412760	1.00[AMR][1000 genomes]
rs73414664	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414692	1.00[AMR][1000 genomes]
rs73424680	1.00[AMR][1000 genomes]
rs9688761	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39512800-39521600	Weak transcription	Aorta	Aorta
2	chr6:39516800-39528800	Weak transcription	Ovary	ovary
3	chr6:39518200-39528000	Weak transcription	Fetal Stomach	stomach
4	chr6:39518400-39520800	Weak transcription	Fetal Lung	lung
5	chr6:39518400-39521600	Weak transcription	Right Atrium	heart
6	chr6:39519600-39521800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:39519800-39521400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:39520000-39521000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:39520000-39521200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:39520000-39522000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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