Variant report

Variant	rs73414664
Chromosome Location	chr6:39509820-39509821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57453942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442613	1.00[AMR][1000 genomes]
rs6904747	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930845	1.00[AMR][1000 genomes]
rs6931048	1.00[AMR][1000 genomes]
rs73412743	1.00[AMR][1000 genomes]
rs73412760	1.00[AMR][1000 genomes]
rs73414667	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414692	1.00[AMR][1000 genomes]
rs73424680	1.00[AMR][1000 genomes]
rs9688761	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689280	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39495200-39511000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:39498600-39510600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:39509400-39510000	Strong transcription	Brain Substantia Nigra	brain
4	chr6:39509400-39511400	Strong transcription	Brain Hippocampus Middle	brain
5	chr6:39509800-39510000	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:39509800-39512600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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