The 2.0 version of rSNPBase

Variant report

Variant rs57462652
Chromosome Location chr5:124243904-124243905
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:124237600-124246800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
2 chr5:124238400-124246200 Weak transcription Aorta Aorta
3 chr5:124240600-124245800 Enhancers Cortex derived primary cultured neurospheres brain
4 chr5:124240800-124244400 Enhancers Fetal Heart heart
5 chr5:124240800-124245400 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr5:124241400-124245600 Enhancers Brain Germinal Matrix brain
7 chr5:124241600-124246000 Enhancers Fetal Adrenal Gland Adrenal Gland
8 chr5:124241800-124245400 Enhancers Adipose Nuclei Adipose
9 chr5:124241800-124246800 Enhancers Liver Liver
10 chr5:124241800-124246800 Enhancers Fetal Lung lung
11 chr5:124242000-124245000 Enhancers Stomach Smooth Muscle stomach
12 chr5:124242000-124246000 Enhancers Fetal Intestine Small intestine
13 chr5:124242000-124246200 Enhancers Fetal Intestine Large intestine
14 chr5:124242000-124246600 Enhancers Ovary ovary
15 chr5:124242600-124248000 Weak transcription Primary B cells from peripheral blood blood
16 chr5:124242800-124244200 Weak transcription Fetal Kidney kidney
17 chr5:124242800-124244400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr5:124242800-124244400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr5:124242800-124244400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr5:124242800-124244400 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr5:124242800-124244400 Enhancers Rectal Mucosa Donor 29 rectum
22 chr5:124242800-124244400 Weak transcription A549 lung
23 chr5:124242800-124244400 Weak transcription GM12878-XiMat blood
24 chr5:124242800-124244600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr5:124242800-124247400 Enhancers Brain Anterior Caudate brain
26 chr5:124242800-124248600 Enhancers Brain Substantia Nigra brain
27 chr5:124243000-124244000 Weak transcription HUVEC blood vessel
28 chr5:124243000-124244200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr5:124243000-124244200 Weak transcription HepG2 liver
30 chr5:124243000-124244200 Weak transcription HSMM muscle
31 chr5:124243000-124244200 Weak transcription NHDF-Ad bronchial
32 chr5:124243000-124244200 Weak transcription Osteobl bone
33 chr5:124243000-124244400 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr5:124243000-124244400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr5:124243000-124244400 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr5:124243000-124244400 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr5:124243000-124244400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:124243000-124244400 Weak transcription Right Ventricle heart
39 chr5:124243000-124244400 Weak transcription HSMMtube muscle
40 chr5:124243000-124244400 Weak transcription NH-A brain
41 chr5:124243000-124244600 Weak transcription Fetal Brain Male brain
42 chr5:124243000-124244800 Weak transcription Stomach Mucosa stomach
43 chr5:124243000-124248600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr5:124243000-124248600 Weak transcription Primary B cells from cord blood blood
45 chr5:124243200-124244200 Weak transcription Primary hematopoietic stem cells blood
46 chr5:124243200-124244200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr5:124243200-124244200 Weak transcription Colon Smooth Muscle Colon
48 chr5:124243200-124244200 Weak transcription Rectal Smooth Muscle rectum
49 chr5:124243200-124244200 Weak transcription Dnd41 blood
50 chr5:124243200-124244400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015