Variant report

Variant	rs73782514
Chromosome Location	chr5:124270343-124270344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34995588	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56079931	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57462652	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57604228	1.00[AMR][1000 genomes]
rs57638155	1.00[AMR][1000 genomes]
rs58364499	1.00[AMR][1000 genomes]
rs6863204	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883637	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782507	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782524	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784349	1.00[AMR][1000 genomes]
rs7732057	1.00[AMR][1000 genomes]
rs7734503	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:124264000-124271400	Weak transcription	HSMM	muscle
4	chr5:124269000-124271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:124269000-124271600	Weak transcription	HMEC	breast
6	chr5:124269200-124270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:124269200-124270800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:124269200-124270800	Weak transcription	Pancreas	Pancrea
9	chr5:124269200-124270800	Weak transcription	NH-A	brain
10	chr5:124269200-124271200	Weak transcription	Right Atrium	heart
11	chr5:124269200-124271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:124269200-124271600	Weak transcription	NHEK	skin
13	chr5:124269400-124270600	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:124269800-124272600	Enhancers	Dnd41	blood
15	chr5:124270000-124270400	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:124270000-124272200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:124270200-124270400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:124270200-124270400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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