Variant report

Variant	rs73782524
Chromosome Location	chr5:124274982-124274983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34995588	1.00[AMR][1000 genomes]
rs56079931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57462652	1.00[AMR][1000 genomes]
rs57604228	1.00[AMR][1000 genomes]
rs57638155	1.00[AMR][1000 genomes]
rs58364499	1.00[AMR][1000 genomes]
rs6863204	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782506	1.00[AMR][1000 genomes]
rs73782507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782514	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782525	1.00[AMR][1000 genomes]
rs73784349	1.00[AMR][1000 genomes]
rs7732057	1.00[AMR][1000 genomes]
rs7734503	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124270400-124276000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124271000-124275800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:124271800-124275400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:124272200-124284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:124274200-124275400	Enhancers	Dnd41	blood
6	chr5:124274400-124275600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:124274800-124275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:124274800-124275200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:124274800-124275200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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