Variant report

Variant	rs57951881
Chromosome Location	chr9:84695693-84695694
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs73463413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463482	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478292	1.00[AMR][1000 genomes]
rs73480313	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480314	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84694800-84695800	Enhancers	Primary B cells from peripheral blood	blood
2	chr9:84695000-84696000	Enhancers	Primary B cells from cord blood	blood
3	chr9:84695400-84699600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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