Variant report
| Variant | rs73463420 |
|---|---|
| Chromosome Location | chr9:84680929-84680930 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr9:84680676-84681146 | MCF-7 | breast: | n/a | n/a |
| 2 | TCF7L2 | chr9:84680711-84680977 | MCF-7 | breast: | n/a | chr9:84680829-84680843 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SPATA31B1 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs57951881 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73463413 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73463449 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73463466 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73463470 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73463482 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73478281 | 1.00[AMR][1000 genomes] |
| rs73478292 | 1.00[AMR][1000 genomes] |
| rs73480313 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73480314 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73480317 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73480322 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73480325 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049305 | chr9:84667596-84918690 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv968712 | chr9:84667794-84682249 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv973379 | chr9:84677143-84682249 | Enhancers | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
