Variant report

Variant	rs73463466
Chromosome Location	chr9:84722408-84722409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57951881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463413	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463420	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478281	1.00[AMR][1000 genomes]
rs73478292	1.00[AMR][1000 genomes]
rs73480313	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480314	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480317	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480322	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84721000-84722800	Enhancers	Brain Hippocampus Middle	brain
2	chr9:84721600-84723800	Weak transcription	Brain Substantia Nigra	brain
3	chr9:84722000-84722600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:84722200-84724000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:84722400-84727200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:84722400-84731400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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