Variant report

Variant	rs73478281
Chromosome Location	chr9:84588004-84588005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57951881	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463413	1.00[AMR][1000 genomes]
rs73463420	1.00[AMR][1000 genomes]
rs73463449	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463466	1.00[AMR][1000 genomes]
rs73463470	1.00[AMR][1000 genomes]
rs73463482	1.00[AMR][1000 genomes]
rs73478239	0.83[AFR][1000 genomes]
rs73478292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480314	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480322	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv6584	chr9:84547871-84606452	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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