Variant report

Variant	rs73480325
Chromosome Location	chr9:84626595-84626596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57951881	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463449	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463470	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73463482	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73478292	1.00[AMR][1000 genomes]
rs73480313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480314	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831639	chr9:84501548-84651151	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv973443	chr9:84618817-84635284	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84626200-84629200	Enhancers	Fetal Intestine Small	intestine
2	chr9:84626400-84626600	Enhancers	Duodenum Mucosa	Duodenum
3	chr9:84626400-84627000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:84626400-84627200	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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