The 2.0 version of rSNPBase

Variant report

Variant rs58246117
Chromosome Location chr1:85654744-85654745
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85608600-85655200 Weak transcription Aorta Aorta
2 chr1:85615400-85655200 Weak transcription Lung lung
3 chr1:85615800-85665800 Weak transcription Esophagus oesophagus
4 chr1:85619000-85655000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:85626800-85655600 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:85627200-85657400 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr1:85627400-85655800 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr1:85627400-85663000 Weak transcription NHEK skin
9 chr1:85627800-85655800 Weak transcription NHDF-Ad bronchial
10 chr1:85627800-85664400 Weak transcription Osteobl bone
11 chr1:85633400-85655000 Weak transcription Fetal Intestine Small intestine
12 chr1:85634000-85655200 Weak transcription Fetal Stomach stomach
13 chr1:85638400-85654800 Weak transcription Primary T cells fromperipheralblood blood
14 chr1:85638600-85655200 Weak transcription Left Ventricle heart
15 chr1:85639000-85665400 Weak transcription Placenta Placenta
16 chr1:85642000-85655800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:85643200-85658800 Weak transcription Pancreatic Islets Pancreatic Islet
18 chr1:85644200-85664400 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:85645400-85654800 Weak transcription NHLF lung
20 chr1:85645600-85655800 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:85645800-85659400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr1:85645800-85663800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:85646000-85655800 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:85646000-85659000 Weak transcription Primary T killer naive cells fromperipheralblood blood
25 chr1:85646000-85661400 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr1:85646000-85664800 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:85646200-85663600 Weak transcription Primary T helper cells PMA-I stimulated --
28 chr1:85646600-85665200 Weak transcription Primary T killer memory cells from peripheral blood blood
29 chr1:85646800-85663800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr1:85647000-85658200 Weak transcription Fetal Muscle Trunk muscle
31 chr1:85647000-85661400 Weak transcription Right Ventricle heart
32 chr1:85647200-85664400 Weak transcription Fetal Kidney kidney
33 chr1:85648400-85665200 Weak transcription Ovary ovary
34 chr1:85648400-85665200 Weak transcription HSMM muscle
35 chr1:85648600-85655000 Weak transcription iPS-18 Cell Line embryonic stem cell
36 chr1:85648600-85655000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:85648600-85655200 Weak transcription H1 Cell Line embryonic stem cell
38 chr1:85648600-85655200 Weak transcription Adipose Nuclei Adipose
39 chr1:85648600-85661200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr1:85648800-85654800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:85648800-85654800 Weak transcription Duodenum Mucosa Duodenum
42 chr1:85648800-85655200 Weak transcription Liver Liver
43 chr1:85648800-85655600 Weak transcription Primary hematopoietic stem cells short term culture blood
44 chr1:85648800-85655600 Weak transcription K562 blood
45 chr1:85648800-85664600 Weak transcription NH-A brain
46 chr1:85649200-85665800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr1:85653200-85655000 Weak transcription Fetal Muscle Leg muscle
48 chr1:85653600-85655200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:85653600-85656200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:85653600-85656400 Strong transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015