The 2.0 version of rSNPBase

Variant report

Variant rs817452
Chromosome Location chr1:85656680-85656681
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85615800-85665800 Weak transcription Esophagus oesophagus
2 chr1:85627200-85657400 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:85627400-85663000 Weak transcription NHEK skin
4 chr1:85627800-85664400 Weak transcription Osteobl bone
5 chr1:85639000-85665400 Weak transcription Placenta Placenta
6 chr1:85643200-85658800 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:85644200-85664400 Weak transcription Muscle Satellite Cultured Cells --
8 chr1:85645800-85659400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:85645800-85663800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:85646000-85659000 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr1:85646000-85661400 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr1:85646000-85664800 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr1:85646200-85663600 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr1:85646600-85665200 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr1:85646800-85663800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr1:85647000-85658200 Weak transcription Fetal Muscle Trunk muscle
17 chr1:85647000-85661400 Weak transcription Right Ventricle heart
18 chr1:85647200-85664400 Weak transcription Fetal Kidney kidney
19 chr1:85648400-85665200 Weak transcription Ovary ovary
20 chr1:85648400-85665200 Weak transcription HSMM muscle
21 chr1:85648600-85661200 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr1:85648800-85664600 Weak transcription NH-A brain
23 chr1:85649200-85665800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:85653600-85664200 Weak transcription HMEC breast
25 chr1:85654000-85664800 Weak transcription HUVEC blood vessel
26 chr1:85654000-85665600 Weak transcription Brain Anterior Caudate brain
27 chr1:85654400-85665600 Weak transcription Brain Substantia Nigra brain
28 chr1:85654400-85665800 Weak transcription Gastric stomach
29 chr1:85654400-85665800 Weak transcription Placenta Amnion Placenta Amnion
30 chr1:85654800-85664600 Weak transcription Colonic Mucosa Colon
31 chr1:85654800-85665600 Weak transcription Pancreas Pancrea
32 chr1:85655000-85661200 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr1:85655200-85661600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:85655400-85658400 Weak transcription Colon Smooth Muscle Colon
35 chr1:85655400-85658400 Weak transcription GM12878-XiMat blood
36 chr1:85655400-85661400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr1:85655600-85656800 Enhancers Rectal Smooth Muscle rectum
38 chr1:85656000-85659400 Weak transcription Left Ventricle heart
39 chr1:85656000-85661400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr1:85656000-85661400 Weak transcription Aorta Aorta
41 chr1:85656000-85664000 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr1:85656000-85664600 Weak transcription Fetal Stomach stomach
43 chr1:85656000-85664600 Weak transcription NHLF lung
44 chr1:85656000-85665600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr1:85656200-85658000 Weak transcription Fetal Muscle Leg muscle
46 chr1:85656200-85661000 Weak transcription Stomach Smooth Muscle stomach
47 chr1:85656200-85661200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:85656200-85661200 Weak transcription Liver Liver
49 chr1:85656200-85661200 Weak transcription HepG2 liver
50 chr1:85656200-85661400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015