The 2.0 version of rSNPBase

Variant report

Variant rs817424
Chromosome Location chr1:85633244-85633245
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85608600-85655200 Weak transcription Aorta Aorta
2 chr1:85610400-85647800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr1:85615400-85647600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr1:85615400-85655200 Weak transcription Lung lung
5 chr1:85615600-85654000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr1:85615800-85665800 Weak transcription Esophagus oesophagus
7 chr1:85616000-85634600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr1:85616000-85638800 Weak transcription Colon Smooth Muscle Colon
9 chr1:85616400-85635800 Weak transcription Left Ventricle heart
10 chr1:85617800-85648000 Weak transcription Liver Liver
11 chr1:85619000-85655000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr1:85619200-85647400 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:85619800-85646800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:85621000-85645000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:85624400-85647600 Weak transcription HSMM muscle
16 chr1:85625600-85654600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:85626600-85637200 Weak transcription Primary T helper cells fromperipheralblood blood
18 chr1:85626600-85637400 Weak transcription K562 blood
19 chr1:85626600-85638400 Weak transcription Pancreas Pancrea
20 chr1:85626800-85655600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:85627200-85657400 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr1:85627400-85654200 Weak transcription Gastric stomach
23 chr1:85627400-85655800 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:85627400-85663000 Weak transcription NHEK skin
25 chr1:85627600-85648000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:85627800-85655800 Weak transcription NHDF-Ad bronchial
27 chr1:85627800-85664400 Weak transcription Osteobl bone
28 chr1:85628400-85647400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:85628600-85648000 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr1:85629000-85645200 Weak transcription Duodenum Mucosa Duodenum
31 chr1:85629800-85653600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:85630400-85638400 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr1:85630600-85633400 Strong transcription Fetal Intestine Small intestine
34 chr1:85630600-85633600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:85630600-85637800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:85630600-85643600 Weak transcription HUES64 Cell Line embryonic stem cell
37 chr1:85630600-85647600 Weak transcription Adipose Nuclei Adipose
38 chr1:85630800-85647800 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:85630800-85647800 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr1:85631200-85654000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr1:85631400-85654200 Weak transcription HepG2 liver
42 chr1:85632000-85648400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:85632200-85634000 Strong transcription Fetal Stomach stomach
44 chr1:85632600-85633400 Strong transcription Ovary ovary
45 chr1:85632600-85633800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:85632600-85634800 Strong transcription Fetal Intestine Large intestine
47 chr1:85632600-85647800 Weak transcription Stomach Smooth Muscle stomach
48 chr1:85632800-85634200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:85632800-85638800 Weak transcription Fetal Heart heart
50 chr1:85632800-85647800 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015