Variant report

Variant	rs58728165
Chromosome Location	chr6:133561007-133561008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:133560943-133561279	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
EYA4	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56024425	1.00[EUR][1000 genomes]
rs61143962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61610658	1.00[EUR][1000 genomes]
rs6900283	0.82[AMR][1000 genomes]
rs6900795	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6928449	1.00[EUR][1000 genomes]
rs73776007	1.00[EUR][1000 genomes]
rs73776008	1.00[EUR][1000 genomes]
rs73776009	1.00[EUR][1000 genomes]
rs7741494	1.00[EUR][1000 genomes]
rs7742767	1.00[EUR][1000 genomes]
rs7749325	1.00[EUR][1000 genomes]
rs7751520	1.00[EUR][1000 genomes]
rs7775612	1.00[EUR][1000 genomes]
rs9483552	1.00[EUR][1000 genomes]
rs9483553	1.00[EUR][1000 genomes]
rs9483556	1.00[EUR][1000 genomes]
rs9493545	1.00[EUR][1000 genomes]
rs9493546	1.00[EUR][1000 genomes]
rs9493553	1.00[EUR][1000 genomes]
rs9493558	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5483	chr6:133554303-133599338	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133559400-133561400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:133560800-133561200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133560800-133561200	Enhancers	Hela-S3	cervix
4	chr6:133560800-133561400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:133560800-133561400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:133560800-133561600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:133560800-133562000	Bivalent Enhancer	Fetal Heart	heart
8	chr6:133561000-133561400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr6:133561000-133561400	Flanking Active TSS	A549	lung

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