Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56024425	1.00[EUR][1000 genomes]
rs58728165	1.00[EUR][1000 genomes]
rs61143962	1.00[EUR][1000 genomes]
rs61610658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900795	1.00[EUR][1000 genomes]
rs6928449	1.00[EUR][1000 genomes]
rs73776007	1.00[EUR][1000 genomes]
rs73776008	1.00[EUR][1000 genomes]
rs73776009	1.00[EUR][1000 genomes]
rs7741494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749325	1.00[EUR][1000 genomes]
rs7751520	1.00[EUR][1000 genomes]
rs7775612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493546	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493553	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133480000-133480800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:133480200-133480600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133480200-133481000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:133480200-133481000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:133480200-133482000	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:133480200-133482400	Enhancers	Brain Hippocampus Middle	brain
7	chr6:133480400-133481000	Enhancers	Brain Anterior Caudate	brain
8	chr6:133480400-133481800	Enhancers	Brain Inferior Temporal Lobe	brain

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